1- Sedigheh Ghanbarzadeh Nodehi, G. V. Shivashankar, Jacques Prost, and Farshid Mohammad-Rafiee, "The characteristics of nuclear membrane fluctuations in stem cells", J. R. Soc. Interface 18, 20201010 (2021).

2- Fatemeh Khodabandeh, Hashem Fatemi, and Farshid Mohammad-Rafiee, "Insight into the unwrapping of the dinucleosome", Soft Matter 16, 4806 (2020).

3- Amir Khosravanizadeh, Pierre Sens, and Farshid Mohammad-Rafiee, "Wrapping of a nanowire by a supported lipid membrane", Soft Matter 15, 7490 (2019).

4- Asal Atakhani, Farshid Mohammad-Rafiee, Azam Gholami, "Influence of cross-linking and retrograde flow on formation and dynamics of lamellipodium", PLoS ONE 14, e0213810 (2019).

5- Amir Rezaie-Dereshgi, and Farshid Mohammad-Rafiee, "Effects of dielectric inhomogeneity on electrostatic twist rigidity of a helical biomolecule in Debye-Hückel regime", J. Chem. Phys. 148, 135101 (2018).

6- Zahra Eidi, Farshid Mohammad-Rafiee, Mohammad Khorrami, and Azam Gholami, "Modelling of Dictyostelium discoideum movement in a linear gradient of chemoattractant", Soft Matter 13, 8209 (2017).

7- Hashem Fatemi, Fatemeh Khodabandeh, and Farshid Mohammad-Rafiee, "Elastic model for dinucleosome structure and energy", Phys. Rev. E 93, 042409 (2016).

8- Bahareh Shakiba, Maryam Dayeri, and Farshid Mohammad-Rafiee, "Modeling of ribosome dynamics on a ds-mRNA under an external load", J. Chem. Phys. 145, 025101 (2016).

9- Seyed Mahmoud Hashemi, Pierre Sens, and Farshid Mohammad-Rafiee, "Regulation of the membrane wrapping transition of a cylindrical target by cytoskeleton adhesion", J. R. Soc. Interface 11, 20140769 (2014).

10- Davood Norouzi, and Farshid Mohammad-Rafiee, "DNA conformation and energy in nucleosome core: a theoretical approach", J. Biomol. Struct. Dyn. 32, 104 (2014).

11- Weria Pezeshkian, Narges Nikoofard, Davood Norouzi, Farshid Mohammad-Rafiee, and Hossein Fazli, "Distribution of counterions and interaction between two similarly charged dielectric slabs: Roles of charge discreteness and dielectric inhomogeneity", Phys. Rev. E 85, 061925 (2012).

12- Laleh Mollazadeh-Beidokhti, Farshid Mohammad-Rafiee, and Helmut Schiessel, "Nucleosome Dynamics between Tension-Induced States", Biophys. J. 102, 2235 (2012).

13- Maryam Ghorbani, and Farshid Mohammad-Rafiee, "Geometrical correlations in the nucleosomal DNA conformation and the role of the covalent bonds rigidity", Nucleic Acids Res. 39, 1220 (2011).

14- L. Mollazadeh-Beidokhti, J. Deseigne, D. Lacoste, F. Mohammad-Rafiee, and H. Schiessel, "Stochastic model for nucleosome sliding under an external force", Phys. Rev. E 79, 031922 (2009).

15- A. Chepelianskii, F. Mohammad-Rafiee, E. Trizac, and E. Raphaël, "On the Effective Charge of Hydrophobic Polyelectrolytes", J. Phys. Chem. B 113, 3743 (2009).

16- Laleh Mollazadeh-Beidokhti, Farshid Mohammad-Rafiee, and Helmut Schiessel, "Active Nucleosome Displacement: A Theoretical Approach", Biophys. J. 96, 4387 (2009).

17- Davood Norouzi, Farshid Mohammad-Rafiee, and Ramin Golestanian, "Effect of Bending Anisotropy on the 3D Conformation of Short DNA Loops", Phys. Rev. Lett. 101, 168103 (2008).

18- Maryam Ghorbani, and Farshid Mohammad-Rafiee, "Twist-stretch correlation of DNA", Phys. Rev. E (Rapid Communications) 78, 060901(R) (2008).

19- Farshid Mohammad-Rafiee, and Ramin Golestanian, "Elastic Correlations in Nucleosomal DNA Structure", Phys. Rev. Lett. 94, 238102 (2005).

20- Farshid Mohammad-Rafiee, and Ramin Golestanian, "The effect of anisotropic bending elasticity on the structure of bent DNA", J. Phys.: Condens. Matter 17, S1165 (2005).

21- Farshid Mohammad-Rafiee, Igor M. Kulic, and Helmut Schiessel, "Theory of Nucleosome Corkscrew Sliding in the Presence of Synthetic DNA Ligands", J. Mol. Biol. 344, 47 (2004).

22- Farshid Mohammad-Rafiee, and Ramin Golestanian, "Electrostatic contribution to twist rigidity of DNA", Phys. Rev. E 69, 061919 (2004).

23- Farshid Mohammad-Rafiee, and Ramin Golestanian, "Nonlinear mechanical response of DNA due to anisotropic bending elasticity", Eur. Phys. J. E 12, 599 (2003).