Fazli, H., Kolahchi, M. R., Golestanian, R., "Orientational Ordering and Dynamics of Rodlike Polyelectrolytes", Phy. Rev. E, 72, 011805-1-011805-6, (2005).


Fazli, H., Golestanian, R., Hansen, P. L., Kolahchi, M. R., "Rod-Like Polyelectrolyte Brushes with Mono and Multivalent Counterions", Europhys. Lett., 73: (3), 429-435, (2006).


Fazli, H., Golestanian, R., "Aggregation Kinetics of Stiff Polyelectrolytes in the Presence of Multivalent Salt", Phys. Rev. E (Also selected for publication in Virtual Journal of Biological Physics Research), 76, 041801-1-6, (2007).


Mohammadinejad, S., Fazli, H., Golestanian, R., "Orientationally Ordered Aggregates of Stiff Polyelectrolytes in the Presence of Multivalent Salt", Soft Matter (RSC), 5, 1522-1529, (2009).
Baratlo, M., Fazli, H., "Molecular Dynamics Simulation of Semiflexible Polyampholyte Brushes—The Effect of Charged Monomers Sequence", Eur. Phys. J. E, 29, 131-138, (2009).
Fazli, H., Mohammadinejad, S., Golestanian, R., "Salt-induced aggregation of stiff polyelectrolytes", J. Phys.: Condens. Matter, 21, 424111-1-9, (2009).


Baratlo, M., Fazli, H., "Brushes of Flexible, Semiflexible, and Rodlike Diblock Polyampholytes: Molecular Dynamics Simulation and scaling Analysis", Phys. Rev. E, 81, 011801-1-7, (2010).
Sakha, F., Fazli, H., "Three-Dimensional Brownian Diffusion of Rod-Like Macromolecules in the Presence of Randomly Distributed Spherical Obstacles: Molecular Dynamics Simulation", J. Chem. Phys. 33, 234904-1-6, (2010)


Fazli, H., Emadi, S., Emamyari, S., Sheikh-Hasani, V., Kargar, F., "Multi-scale Molecular Dynamics Simulations and Experimental Study of Peptides Self-assembly. J. Iran. Chem. Soc, 8, A78-A81, (2011).
Nikoofard, N., Fazli, H., "Free-Energy Barrier for Electric-Field-Driven Polymer Entry into Nanoscale Channels", Phys. Rev. E (Rapid Communications), 83: (5), 050801-1-4, (2011).


Mohammadinejad, S., Golestanian, R., Fazli, H., "Chiral structure of F-actin bundle formed by multivalent counterions", Soft Matter (RSC), 8, 3649-3656 , (2012).
Nikoofard, N., Fazli, H., "Electric-field-driven polymer entry into asymmetric nanoscale channels", Phys. Rev. E , 85, 021804-1-021804-10, (2012).
Pezeshkian, W., Nikoofard, N., Norouzi, D., Mohammad-Rafiee, F., Fazli, H., "Distribution of counterions and interaction between two similarly charged dielectric slabs: Roles of charge discreteness and dielectric inhomogeneity",


Nikoofard, N., Khalilian, H. R., Fazli, H., "Directed translocation of a flexible polymer through a cone-shaped nano-channel ", J. Chem. Phys, 139, 074901-1-074901-8, (2013).


Emamyari, S., Fazli, H., "pH-dependent self-assembly of EAK16 peptides in the presence of a hydrophobic surface: Coarse-grained molecular dynamics simulation ", Soft Matter (RSC), 10, 4248-4257, (2014).
Emamyari, S., Fazli, H., "All-atom molecular dynamics study of EAK16 peptide: the effect of pH on single-chain conformation, dimerization and self-assembly behavior", Eur Biophys J, 43, 143-155, (2014).


Emamyari, S., Kargar, F., Sheikh hasani, V., Emadi, S., Fazli, H., "Mechanisms of the self-assembly of EAK16-family peptides into fibrillar and globular structures: molecular dynamics simulations from nano- to micro-seconds"
Nikoofard, N., Fazli, H., "A flexible polymer confined inside a cone-shaped nano-channel", Soft Matter, 11, 4879-4887, (2015).


Khalilian, H., Fazli, H., “Obstruction enhances the diffusivity of self-propelled rod-like particles”, to be published in J. Chem. Phys., (2016).


Mohammadi, M., Fazli, H., Karevan, M., Davoodi, J., "The glass transition temperature of PMMA: A molecular dynamics study and comparison of various determination methods", European Polymer Journal, 91, 121-133, (2017).


Kolahchi, M. R., Fazli, H., "Behavior of a Josephson-Junction Array with Golden Mean Frustration", Phys. Rev. B, 62: (13), 9089-9094, (2000)